IL_6BOH_314

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

6BOH|1|GB|G|2576, 6BOH|1|GB|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_314 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.081

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6BOH|1|GB|C|2510
6BOH|1|GB|U|2511
6BOH|1|GB|C|2512
*
6BOH|1|GB|G|2574
6BOH|1|GB|C|2575
6BOH|1|GB|G|2576
6BOH|1|GB|A|2577
6BOH|1|GB|G|2578

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain HC

50S ribosomal protein L32

Chain KB

50S ribosomal protein L3