IL_6BOH_315

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CACG

Length

6 nucleotides

Bulged bases

6BOH|1|GB|A|2572, 6BOH|1|GB|C|2573

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_315 not in the Motif Atlas

Geometric match to IL_4WF9_096

Geometric discrepancy: 0.0929

The information below is about IL_4WF9_096

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

6BOH|1|GB|C|2512
6BOH|1|GB|G|2513
*
6BOH|1|GB|C|2571
6BOH|1|GB|A|2572
6BOH|1|GB|C|2573
6BOH|1|GB|G|2574

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L13