3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UUGAG*CAAGAUGAG
Length
14 nucleotides
Bulged bases
6BOH|1|GB|G|2780
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_319 not in the Motif Atlas
Homologous match to IL_7RQB_102
Geometric discrepancy: 0.0735
The information below is about IL_7RQB_102
Detailed Annotation
tSH-tHS-tHW
Broad Annotation
tSH-tHS-tHW
Motif group
IL_04638.1
Basepair signature
cWW-tSH-tHW-tHS-cSH-cWW-L
Number of instances in this motif group
5

Unit IDs

6BOH|1|GB|U|2636
6BOH|1|GB|U|2637
6BOH|1|GB|G|2638
6BOH|1|GB|A|2639
6BOH|1|GB|G|2640
*
6BOH|1|GB|C|2774
6BOH|1|GB|A|2775
6BOH|1|GB|A|2776
6BOH|1|GB|G|2777
6BOH|1|GB|A|2778
6BOH|1|GB|U|2779
6BOH|1|GB|G|2780
6BOH|1|GB|A|2781
6BOH|1|GB|G|2782

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain KB
50S ribosomal protein L3
Chain PB
50S ribosomal protein L13

Coloring options:


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