IL_6BOH_319

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

6BOH|1|GB|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_319 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0735

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

6BOH|1|GB|U|2636
6BOH|1|GB|U|2637
6BOH|1|GB|G|2638
6BOH|1|GB|A|2639
6BOH|1|GB|G|2640
*
6BOH|1|GB|C|2774
6BOH|1|GB|A|2775
6BOH|1|GB|A|2776
6BOH|1|GB|G|2777
6BOH|1|GB|A|2778
6BOH|1|GB|U|2779
6BOH|1|GB|G|2780
6BOH|1|GB|A|2781
6BOH|1|GB|G|2782

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain KB

50S ribosomal protein L3

Chain PB

50S ribosomal protein L13