3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
UGUAAG*UUGAG
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_327 not in the Motif Atlas
Homologous match to IL_7RQB_110
Geometric discrepancy: 0.1079
The information below is about IL_7RQB_110
Detailed Annotation
tHS double platform
Broad Annotation
No text annotation
Motif group
IL_83162.5
Basepair signature
cWW-tSH-L-tHH-L-cWW
Number of instances in this motif group
7

Unit IDs

6BOH|1|GB|U|2847
6BOH|1|GB|G|2848
6BOH|1|GB|U|2849
6BOH|1|GB|A|2850
6BOH|1|GB|A|2851
6BOH|1|GB|G|2852
*
6BOH|1|GB|U|2865
6BOH|1|GB|U|2866
6BOH|1|GB|G|2867
6BOH|1|GB|A|2868
6BOH|1|GB|G|2869

Current chains

Chain GB
23S ribosomal RNA

Nearby chains

Chain TB
50S ribosomal protein L17
Chain VB
50S ribosomal protein L19

Coloring options:


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