IL_6BOH_328

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

6BOH|1|HB|A|66

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_328 not in the Motif Atlas

Homologous match to IL_4V9F_101

Geometric discrepancy: 0.1251

The information below is about IL_4V9F_101

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_14190.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

134

Unit IDs

6BOH|1|HB|C|17
6BOH|1|HB|G|18
*
6BOH|1|HB|C|65
6BOH|1|HB|A|66
6BOH|1|HB|G|67

Current chains

Chain HB

5S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain UB

50S ribosomal protein L18