3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
GGAAU*GGAAC
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BOH_338 not in the Motif Atlas
Homologous match to IL_5J7L_361
Geometric discrepancy: 0.0875
The information below is about IL_5J7L_361
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

6BOH|1|A|G|673
6BOH|1|A|G|674
6BOH|1|A|A|675
6BOH|1|A|A|676
6BOH|1|A|U|677
*
6BOH|1|A|G|713
6BOH|1|A|G|714
6BOH|1|A|A|715
6BOH|1|A|A|716
6BOH|1|A|C|717

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain BB
30S ribosomal protein S18
Chain E
50S ribosomal protein L2
Chain PA
30S ribosomal protein S6
Chain UA
30S ribosomal protein S11

Coloring options:


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