IL_6BOH_344

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

G(4OC)C(5MC)*G(UR3)AAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 4OC, 5MC, UR3

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_344 not in the Motif Atlas

Homologous match to IL_4LFB_068

Geometric discrepancy: 0.1034

The information below is about IL_4LFB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.4

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6BOH|1|A|G|1401
6BOH|1|A|4OC|1402
6BOH|1|A|C|1403
6BOH|1|A|5MC|1404
*
6BOH|1|A|G|1497
6BOH|1|A|UR3|1498
6BOH|1|A|A|1499
6BOH|1|A|A|1500
6BOH|1|A|C|1501

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain HA

mRNA

Chain IA

Transfer RNA; tRNA

Chain JA

Peptide chain release factor 1