IL_6BOH_372

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6BOH|1|GB|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_372 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1151

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6BOH|1|GB|C|844
6BOH|1|GB|G|845
6BOH|1|GB|C|846
6BOH|1|GB|U|847
6BOH|1|GB|G|848
6BOH|1|GB|A|849
6BOH|1|GB|C|850
*
6BOH|1|GB|G|928
6BOH|1|GB|G|929
6BOH|1|GB|U|930
6BOH|1|GB|G|931
6BOH|1|GB|G|932
6BOH|1|GB|A|933
6BOH|1|GB|G|934

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain FC

50S ribosomal protein L30

Chain M

50S ribosomal protein L15