IL_6BOH_373

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

AUA*UGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_373 not in the Motif Atlas

Homologous match to IL_9DFE_029

Geometric discrepancy: 0.0913

The information below is about IL_9DFE_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42997.3

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

20

Unit IDs

6BOH|1|GB|A|870
6BOH|1|GB|U|871
6BOH|1|GB|A|872
*
6BOH|1|GB|U|905
6BOH|1|GB|G|906
6BOH|1|GB|U|907

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain BC

50S ribosomal protein L25

Chain HB

5S ribosomal RNA; 5S rRNA

Chain SB

50S ribosomal protein L16