IL_6BOH_378

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UG*UGAA

Length

6 nucleotides

Bulged bases

6BOH|1|GB|A|1900

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_378 not in the Motif Atlas

Homologous match to IL_9DFE_072

Geometric discrepancy: 0.1463

The information below is about IL_9DFE_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66635.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

6BOH|1|GB|U|1841
6BOH|1|GB|G|1842
*
6BOH|1|GB|U|1898
6BOH|1|GB|G|1899
6BOH|1|GB|A|1900
6BOH|1|GB|A|1901

Current chains

Chain GB

23S ribosomal RNA

Nearby chains

Chain FB

Small subunit ribosomal RNA; SSU rRNA

Chain JB

50S ribosomal protein L2