IL_6BOH_395

3D structure

PDB id

6BOH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOH_395 not in the Motif Atlas

Homologous match to IL_4LFB_032

Geometric discrepancy: 0.1329

The information below is about IL_4LFB_032

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.2

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

3

Unit IDs

6BOH|1|FB|G|774
6BOH|1|FB|G|775
6BOH|1|FB|G|776
6BOH|1|FB|A|777
6BOH|1|FB|G|778
*
6BOH|1|FB|U|804
6BOH|1|FB|C|805

Current chains

Chain FB

16S ribosomal RNA

Nearby chains

Chain GB

Large subunit ribosomal RNA; LSU rRNA

Chain JB

50S ribosomal protein L2

Chain ZC

30S ribosomal protein S11