IL_6BOK_021
3D structure
- PDB id
- 6BOK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.55 Å
Loop
- Sequence
- G(PSU)GCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6BOK|1|A|A|532, 6BOK|1|A|U|534
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6BOK_021 not in the Motif Atlas
- Geometric match to IL_4V88_415
- Geometric discrepancy: 0.2608
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
6BOK|1|A|G|515
6BOK|1|A|PSU|516
6BOK|1|A|G|517
6BOK|1|A|C|518
6BOK|1|A|C|519
6BOK|1|A|A|520
6BOK|1|A|G|521
*
6BOK|1|A|C|528
6BOK|1|A|G|529
6BOK|1|A|G|530
6BOK|1|A|U|531
6BOK|1|A|A|532
6BOK|1|A|A|533
6BOK|1|A|U|534
6BOK|1|A|A|535
6BOK|1|A|C|536
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain GD
- Peptide chain release factor 1
- Chain HA
- mRNA
- Chain KA
- 30S ribosomal protein S3
- Chain LA
- 30S ribosomal protein S4
- Chain TA
- 30S ribosomal protein S12
Coloring options: