IL_6BOK_200

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

6BOK|1|DB|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_200 not in the Motif Atlas

Geometric match to IL_4LFB_029

Geometric discrepancy: 0.1004

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

6BOK|1|DB|G|662
6BOK|1|DB|A|663
6BOK|1|DB|G|664
6BOK|1|DB|A|665
6BOK|1|DB|G|666
*
6BOK|1|DB|U|740
6BOK|1|DB|G|741
6BOK|1|DB|G|742
6BOK|1|DB|U|743

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S18

Chain QC

30S ribosomal protein S6

Chain ZC

30S ribosomal protein S15