IL_6BOK_225

3D structure

PDB id

6BOK (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.55 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BOK_225 not in the Motif Atlas

Geometric match to IL_4LFB_055

Geometric discrepancy: 0.0884

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6BOK|1|DB|C|1303
6BOK|1|DB|G|1304
6BOK|1|DB|G|1305
6BOK|1|DB|A|1306
6BOK|1|DB|U|1307
6BOK|1|DB|U|1308
*
6BOK|1|DB|A|1329
6BOK|1|DB|U|1330
6BOK|1|DB|G|1331
6BOK|1|DB|A|1332
6BOK|1|DB|A|1333
6BOK|1|DB|G|1334

Current chains

Chain DB

16S ribosomal RNA

Nearby chains

Chain FD

30S ribosomal protein Thx

Chain XC

30S ribosomal protein S13