IL_6BU8_035

3D structure

PDB id

6BU8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with S1 domains 1 and 2 (Class 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6BU8|1|01|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BU8_035 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.2301

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6BU8|1|01|U|1018
6BU8|1|01|U|1019
6BU8|1|01|A|1020
6BU8|1|01|A|1021
6BU8|1|01|G|1022
6BU8|1|01|U|1023
6BU8|1|01|G|1024
*
6BU8|1|01|C|1140
6BU8|1|01|U|1141
6BU8|1|01|A|1142
6BU8|1|01|A|1143
6BU8|1|01|A|1144

Current chains

Chain 01

23S ribosomal RNA

Nearby chains

Chain 08

50S ribosomal protein L6

Chain 12

50S ribosomal protein L13

Chain 34

50S ribosomal protein L36