IL_6BUW_021

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6BUW|1|QA|A|532, 6BUW|1|QA|U|534, 6BUW|1|QA|A|535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_021 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1654

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6BUW|1|QA|G|515
6BUW|1|QA|U|516
6BUW|1|QA|G|517
6BUW|1|QA|C|518
6BUW|1|QA|C|519
6BUW|1|QA|A|520
6BUW|1|QA|G|521
*
6BUW|1|QA|C|528
6BUW|1|QA|G|529
6BUW|1|QA|G|530
6BUW|1|QA|U|531
6BUW|1|QA|A|532
6BUW|1|QA|A|533
6BUW|1|QA|U|534
6BUW|1|QA|A|535
6BUW|1|QA|C|536

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QC

30S ribosomal protein S3

Chain QD

30S ribosomal protein S4

Chain QL

30S ribosomal protein S12