IL_6BUW_055

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

6BUW|1|QA|A|1493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_055 not in the Motif Atlas

Geometric match to IL_5Z1I_002

Geometric discrepancy: 0.2806

The information below is about IL_5Z1I_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

6BUW|1|QA|C|1407
6BUW|1|QA|A|1408
6BUW|1|QA|C|1409
*
6BUW|1|QA|G|1491
6BUW|1|QA|A|1492
6BUW|1|QA|A|1493
6BUW|1|QA|G|1494

Current chains

Chain QA

16S rRNA

Nearby chains

Chain QL

30S ribosomal protein S12

Chain QX

messenger RNA

Chain RA

Large subunit ribosomal RNA; LSU rRNA