IL_6BUW_366

3D structure

PDB id

6BUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G299A ram mutation and empty A site.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUCGUG*CGGC

Length

10 nucleotides

Bulged bases

6BUW|1|XA|G|64, 6BUW|1|XA|U|65

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BUW_366 not in the Motif Atlas

Geometric match to IL_1GID_008

Geometric discrepancy: 0.3134

The information below is about IL_1GID_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

6BUW|1|XA|G|61
6BUW|1|XA|U|62
6BUW|1|XA|C|63
6BUW|1|XA|G|64
6BUW|1|XA|U|65
6BUW|1|XA|G|66
*
6BUW|1|XA|C|103
6BUW|1|XA|G|104
6BUW|1|XA|G|105
6BUW|1|XA|C|106

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XP

30S ribosomal protein S16

Chain XT

30S ribosomal protein S20