IL_6BY1_038

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_038 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.1433

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6BY1|1|AA|G|887
6BY1|1|AA|G|888
6BY1|1|AA|A|889
6BY1|1|AA|G|890
6BY1|1|AA|U|891
6BY1|1|AA|A|892
6BY1|1|AA|C|893
6BY1|1|AA|G|894
*
6BY1|1|AA|U|905
6BY1|1|AA|A|906
6BY1|1|AA|A|907
6BY1|1|AA|A|908
6BY1|1|AA|A|909
6BY1|1|AA|C|910

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain CA

Large subunit ribosomal RNA; LSU rRNA