3D structure

PDB id
6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pH03H9 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.94 Å

Loop

Sequence
GUC*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BY1_049 not in the Motif Atlas
Homologous match to IL_4LFB_047
Geometric discrepancy: 0.2514
The information below is about IL_4LFB_047
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_28037.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
65

Unit IDs

6BY1|1|AA|G|1061
6BY1|1|AA|U|1062
6BY1|1|AA|C|1063
*
6BY1|1|AA|G|1193
6BY1|1|AA|U|1194
6BY1|1|AA|C|1195

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AC
30S ribosomal protein S3
Chain AE
30S ribosomal protein S5
Chain AI
30S ribosomal protein S9
Chain AJ
30S ribosomal protein S10
Chain AN
30S ribosomal protein S14
Chain AX
Messenger RNA

Coloring options:


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