IL_6BY1_075

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6BY1|1|BA|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_075 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2867

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

6BY1|1|BA|G|147
6BY1|1|BA|G|148
6BY1|1|BA|A|149
6BY1|1|BA|U|150
6BY1|1|BA|A|151
6BY1|1|BA|A|152
6BY1|1|BA|C|153
*
6BY1|1|BA|G|168
6BY1|1|BA|C|169
6BY1|1|BA|U|170
6BY1|1|BA|A|171
6BY1|1|BA|A|172
6BY1|1|BA|U|173
6BY1|1|BA|A|174
6BY1|1|BA|C|175

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S20