IL_6BY1_077

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

6BY1|1|BA|U|244, 6BY1|1|BA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_077 not in the Motif Atlas

Homologous match to IL_5J7L_014

Geometric discrepancy: 0.197

The information below is about IL_5J7L_014

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6BY1|1|BA|G|242
6BY1|1|BA|A|243
6BY1|1|BA|U|244
6BY1|1|BA|U|245
6BY1|1|BA|A|246
6BY1|1|BA|G|247
*
6BY1|1|BA|C|277
6BY1|1|BA|G|278
6BY1|1|BA|A|279
6BY1|1|BA|C|280
6BY1|1|BA|G|281
6BY1|1|BA|A|282
6BY1|1|BA|U|283
6BY1|1|BA|C|284

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BL

30S ribosomal protein S12

Chain BQ

30S ribosomal protein S17