IL_6BY1_087

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGGCUAAC*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_087 not in the Motif Atlas

Homologous match to IL_6CZR_132

Geometric discrepancy: 0.1749

The information below is about IL_6CZR_132

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.3

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

6BY1|1|BA|C|504
6BY1|1|BA|G|505
6BY1|1|BA|G|506
6BY1|1|BA|C|507
6BY1|1|BA|U|508
6BY1|1|BA|A|509
6BY1|1|BA|A|510
6BY1|1|BA|C|511
*
6BY1|1|BA|G|540
6BY1|1|BA|G|541

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BD

30S ribosomal protein S4

Chain BL

30S ribosomal protein S12