IL_6BY1_100

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_100 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.1763

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

6BY1|1|BA|C|779
6BY1|1|BA|A|780
6BY1|1|BA|A|781
6BY1|1|BA|A|782
6BY1|1|BA|C|783
*
6BY1|1|BA|G|799
6BY1|1|BA|G|800
6BY1|1|BA|U|801
6BY1|1|BA|A|802
6BY1|1|BA|G|803

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BK

30S ribosomal protein S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA