IL_6BY1_144

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

6BY1|1|CA|G|801, 6BY1|1|CA|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_144 not in the Motif Atlas

Geometric match to IL_5J7L_260

Geometric discrepancy: 0.1354

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

6BY1|1|CA|G|674
6BY1|1|CA|A|675
6BY1|1|CA|A|676
6BY1|1|CA|A|677
6BY1|1|CA|C|678
*
6BY1|1|CA|G|799
6BY1|1|CA|A|800
6BY1|1|CA|G|801
6BY1|1|CA|A|802
6BY1|1|CA|U|803
6BY1|1|CA|A|804
6BY1|1|CA|G|805
6BY1|1|CA|C|806

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain CE

50S ribosomal protein L4

Chain CL

50S ribosomal protein L15