IL_6BY1_209

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

AUG*CUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_209 not in the Motif Atlas

Homologous match to IL_3U4M_001

Geometric discrepancy: 0.396

The information below is about IL_3U4M_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6BY1|1|CA|A|2108
6BY1|1|CA|U|2109
6BY1|1|CA|G|2110
*
6BY1|1|CA|C|2179
6BY1|1|CA|U|2180
6BY1|1|CA|U|2181

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA