IL_6BY1_219

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCAAG*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_219 not in the Motif Atlas

Homologous match to IL_7A0S_087

Geometric discrepancy: 0.205

The information below is about IL_7A0S_087

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_87767.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

17

Unit IDs

6BY1|1|CA|C|2466
6BY1|1|CA|C|2467
6BY1|1|CA|A|2468
6BY1|1|CA|A|2469
6BY1|1|CA|G|2470
*
6BY1|1|CA|C|2480
6BY1|1|CA|G|2481
6BY1|1|CA|A|2482
6BY1|1|CA|C|2483
6BY1|1|CA|G|2484

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain C6

50S ribosomal protein L36

Chain CM

50S ribosomal protein L16