IL_6BY1_236

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CGC*GUAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_236 not in the Motif Atlas

Geometric match to IL_4OQU_001

Geometric discrepancy: 0.3567

The information below is about IL_4OQU_001

Detailed Annotation

Major groove platform with extra pair

Broad Annotation

Major groove platform

Motif group

IL_15698.5

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6BY1|1|CB|C|17
6BY1|1|CB|G|18
6BY1|1|CB|C|19
*
6BY1|1|CB|G|64
6BY1|1|CB|U|65
6BY1|1|CB|A|66
6BY1|1|CB|G|67

Current chains

Chain CB

5S ribosomal RNA

Nearby chains

Chain CA

Large subunit ribosomal RNA; LSU rRNA