IL_6BY1_270

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GGGG*CUUAC

Length

9 nucleotides

Bulged bases

6BY1|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_270 not in the Motif Atlas

Geometric match to IL_5J7L_327

Geometric discrepancy: 0.3308

The information below is about IL_5J7L_327

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_43644.1

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

2

Unit IDs

6BY1|1|DA|G|880
6BY1|1|DA|G|881
6BY1|1|DA|G|882
6BY1|1|DA|G|883
*
6BY1|1|DA|C|893
6BY1|1|DA|U|894
6BY1|1|DA|U|895
6BY1|1|DA|A|896
6BY1|1|DA|C|897

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BV

Transfer RNA; tRNA