3D structure

PDB id
6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli pH03H9 complex
Experimental method
X-RAY DIFFRACTION
Resolution
3.94 Å

Loop

Sequence
CCA*UG
Length
5 nucleotides
Bulged bases
6BY1|1|DA|C|995
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6BY1_271 not in the Motif Atlas
Homologous match to IL_7RQB_035
Geometric discrepancy: 0.2423
The information below is about IL_7RQB_035
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.12
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

6BY1|1|DA|C|994
6BY1|1|DA|C|995
6BY1|1|DA|A|996
*
6BY1|1|DA|U|1159
6BY1|1|DA|G|1160

Current chains

Chain DA
23S ribosomal RNA

Nearby chains

Chain DJ
50S ribosomal protein L13
Chain DQ
50S ribosomal protein L20
Chain DR
50S ribosomal protein L21
Chain DZ
50S ribosomal protein L30

Coloring options:


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