IL_6BY1_273

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UCCCAAAG*CA

Length

10 nucleotides

Bulged bases

6BY1|1|DA|C|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_273 not in the Motif Atlas

Geometric match to IL_5J7L_278

Geometric discrepancy: 0.1811

The information below is about IL_5J7L_278

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.4

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

11

Unit IDs

6BY1|1|DA|U|1004
6BY1|1|DA|C|1005
6BY1|1|DA|C|1006
6BY1|1|DA|C|1007
6BY1|1|DA|A|1008
6BY1|1|DA|A|1009
6BY1|1|DA|A|1010
6BY1|1|DA|G|1011
*
6BY1|1|DA|C|1150
6BY1|1|DA|A|1151

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DJ

50S ribosomal protein L13

Chain DQ

50S ribosomal protein L20