IL_6BY1_277

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAUG*CGC

Length

7 nucleotides

Bulged bases

6BY1|1|DA|U|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_277 not in the Motif Atlas

Homologous match to IL_4WF9_041

Geometric discrepancy: 0.1758

The information below is about IL_4WF9_041

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

6BY1|1|DA|G|1031
6BY1|1|DA|A|1032
6BY1|1|DA|U|1033
6BY1|1|DA|G|1034
*
6BY1|1|DA|C|1121
6BY1|1|DA|G|1122
6BY1|1|DA|C|1123

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L36

Chain DB

5S ribosomal RNA; 5S rRNA

Chain DM

50S ribosomal protein L16