IL_6BY1_286

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

6BY1|1|DA|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_286 not in the Motif Atlas

Homologous match to IL_4WF9_050

Geometric discrepancy: 0.1691

The information below is about IL_4WF9_050

Detailed Annotation

Major groove minor groove platform with tHH

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

6BY1|1|DA|C|1319
6BY1|1|DA|C|1320
6BY1|1|DA|A|1321
6BY1|1|DA|A|1322
6BY1|1|DA|C|1323
*
6BY1|1|DA|G|1331
6BY1|1|DA|G|1332
6BY1|1|DA|G|1333

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DS

50S ribosomal protein L22

Chain DT

50S ribosomal protein L23