IL_6BY1_300

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_300 not in the Motif Atlas

Homologous match to IL_7A0S_059

Geometric discrepancy: 0.1138

The information below is about IL_7A0S_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12566.4

Basepair signature

cWW-L-tHS-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6BY1|1|DA|G|1651
6BY1|1|DA|A|1652
6BY1|1|DA|G|1653
6BY1|1|DA|A|1654
6BY1|1|DA|A|1655
6BY1|1|DA|C|1656
*
6BY1|1|DA|G|2004
6BY1|1|DA|A|2005
6BY1|1|DA|C|2006

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17