IL_6BY1_312

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_312 not in the Motif Atlas

Homologous match to IL_7A0S_071

Geometric discrepancy: 0.1771

The information below is about IL_7A0S_071

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_22551.4

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

9

Unit IDs

6BY1|1|DA|G|1933
6BY1|1|DA|C|1934
*
6BY1|1|DA|G|1964
6BY1|1|DA|C|1965
6BY1|1|DA|A|1966
6BY1|1|DA|C|1967

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain BW

Transfer RNA; tRNA