IL_6BY1_337

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

6BY1|1|DA|U|2689, 6BY1|1|DA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_337 not in the Motif Atlas

Homologous match to IL_4WF9_102

Geometric discrepancy: 0.1375

The information below is about IL_4WF9_102

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

6BY1|1|DA|U|2687
6BY1|1|DA|G|2688
6BY1|1|DA|U|2689
6BY1|1|DA|U|2690
6BY1|1|DA|C|2691
*
6BY1|1|DA|G|2718
6BY1|1|DA|G|2719
6BY1|1|DA|U|2720
6BY1|1|DA|A|2721
6BY1|1|DA|G|2722

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DN

50S ribosomal protein L17

Chain DP

50S ribosomal protein L19