IL_6BY1_352

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_352 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.3299

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|AA|G|450
6BY1|1|AA|A|451
6BY1|1|AA|A|452
6BY1|1|AA|G|453
6BY1|1|AA|G|454
6BY1|1|AA|G|455
*
6BY1|1|AA|C|477
6BY1|1|AA|A|478
6BY1|1|AA|U|479
6BY1|1|AA|U|480
6BY1|1|AA|G|481
6BY1|1|AA|A|482
6BY1|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16