IL_6BY1_357

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUUCA*UGAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_357 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3395

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6BY1|1|AA|U|1008
6BY1|1|AA|U|1009
6BY1|1|AA|U|1010
6BY1|1|AA|C|1011
6BY1|1|AA|A|1012
*
6BY1|1|AA|U|1017
6BY1|1|AA|G|1018
6BY1|1|AA|A|1019
6BY1|1|AA|G|1020
6BY1|1|AA|A|1021

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AN

30S ribosomal protein S14

Chain AS

30S ribosomal protein S19