IL_6BY1_358

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

6BY1|1|AA|C|1200, 6BY1|1|AA|A|1201

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_358 not in the Motif Atlas

Homologous match to IL_6CZR_155

Geometric discrepancy: 0.1883

The information below is about IL_6CZR_155

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6BY1|1|AA|G|1057
6BY1|1|AA|G|1058
*
6BY1|1|AA|U|1199
6BY1|1|AA|C|1200
6BY1|1|AA|A|1201
6BY1|1|AA|U|1202
6BY1|1|AA|C|1203

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AC

30S ribosomal protein S3

Chain AJ

30S ribosomal protein S10

Chain AN

30S ribosomal protein S14

Chain AV

Transfer RNA; tRNA