IL_6BY1_378

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_378 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1583

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6BY1|1|CA|U|1851
6BY1|1|CA|U|1852
6BY1|1|CA|A|1853
6BY1|1|CA|A|1854
6BY1|1|CA|U|1855
6BY1|1|CA|U|1856
6BY1|1|CA|G|1857
6BY1|1|CA|A|1858
6BY1|1|CA|U|1859
6BY1|1|CA|G|1860
*
6BY1|1|CA|U|1882
6BY1|1|CA|U|1883
6BY1|1|CA|G|1884
6BY1|1|CA|A|1885
6BY1|1|CA|U|1886
6BY1|1|CA|C|1887
6BY1|1|CA|G|1888
6BY1|1|CA|A|1889
6BY1|1|CA|A|1890
6BY1|1|CA|G|1891

Current chains

Chain CA

23S ribosomal RNA

Nearby chains

Chain AY

Transfer RNA; tRNA