IL_6BY1_385

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

CCCAGUAG*CGAACGG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_385 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.2309

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.2

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6BY1|1|DA|C|238
6BY1|1|DA|C|239
6BY1|1|DA|C|240
6BY1|1|DA|A|241
6BY1|1|DA|G|242
6BY1|1|DA|U|243
6BY1|1|DA|A|244
6BY1|1|DA|G|245
*
6BY1|1|DA|C|253
6BY1|1|DA|G|254
6BY1|1|DA|A|255
6BY1|1|DA|A|256
6BY1|1|DA|C|257
6BY1|1|DA|G|258
6BY1|1|DA|G|259

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D4

50S ribosomal protein L35

Chain DL

50S ribosomal protein L15