IL_6BY1_398

3D structure

PDB id

6BY1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli pH03H9 complex

Experimental method

X-RAY DIFFRACTION

Resolution

3.94 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

6BY1|1|DA|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BY1_398 not in the Motif Atlas

Homologous match to IL_9DFE_082

Geometric discrepancy: 0.1968

The information below is about IL_9DFE_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

6BY1|1|DA|U|2081
6BY1|1|DA|A|2082
6BY1|1|DA|G|2083
*
6BY1|1|DA|U|2236
6BY1|1|DA|G|2237
6BY1|1|DA|G|2238
6BY1|1|DA|G|2239

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28