IL_6BZ6_183

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6BZ6|1|XA|U|244, 6BZ6|1|XA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_183 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0881

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.3

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

5

Unit IDs

6BZ6|1|XA|C|242
6BZ6|1|XA|A|243
6BZ6|1|XA|U|244
6BZ6|1|XA|C|245
6BZ6|1|XA|A|246
6BZ6|1|XA|G|247
*
6BZ6|1|XA|C|277
6BZ6|1|XA|G|278
6BZ6|1|XA|A|279
6BZ6|1|XA|C|280
6BZ6|1|XA|G|281
6BZ6|1|XA|A|282
6BZ6|1|XA|C|283
6BZ6|1|XA|G|284

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XL

30S ribosomal protein S12

Chain XQ

30S ribosomal protein S17