IL_6BZ6_194

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6BZ6|1|XA|A|532, 6BZ6|1|XA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ6_194 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.157

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6BZ6|1|XA|G|515
6BZ6|1|XA|U|516
6BZ6|1|XA|G|517
6BZ6|1|XA|C|518
6BZ6|1|XA|C|519
6BZ6|1|XA|A|520
6BZ6|1|XA|G|521
*
6BZ6|1|XA|C|528
6BZ6|1|XA|G|529
6BZ6|1|XA|G|530
6BZ6|1|XA|U|531
6BZ6|1|XA|A|532
6BZ6|1|XA|A|533
6BZ6|1|XA|U|534
6BZ6|1|XA|A|535
6BZ6|1|XA|C|536

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12