IL_6BZ8_192

3D structure

PDB id

6BZ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S containing 16S G347U point mutation and near-cognate ASL Leucine in A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.74 Å

Loop

Sequence

GUGCCAG*CGGUAAUAC

Length

16 nucleotides

Bulged bases

6BZ8|1|XA|A|532, 6BZ8|1|XA|U|534

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6BZ8_192 not in the Motif Atlas

Geometric match to IL_4V88_415

Geometric discrepancy: 0.1553

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

6BZ8|1|XA|G|515
6BZ8|1|XA|U|516
6BZ8|1|XA|G|517
6BZ8|1|XA|C|518
6BZ8|1|XA|C|519
6BZ8|1|XA|A|520
6BZ8|1|XA|G|521
*
6BZ8|1|XA|C|528
6BZ8|1|XA|G|529
6BZ8|1|XA|G|530
6BZ8|1|XA|U|531
6BZ8|1|XA|A|532
6BZ8|1|XA|A|533
6BZ8|1|XA|U|534
6BZ8|1|XA|A|535
6BZ8|1|XA|C|536

Current chains

Chain XA

16S rRNA

Nearby chains

Chain XC

30S ribosomal protein S3

Chain XD

30S ribosomal protein S4

Chain XL

30S ribosomal protein S12

Chain XX

messenger RNA

Chain XY

ASL Leu