IL_6C0F_035

3D structure

PDB id

6C0F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast nucleolar pre-60S ribosomal subunit (state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CAAAUUGAU*AG

Length

11 nucleotides

Bulged bases

6C0F|1|1|A|1452, 6C0F|1|1|A|1453

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C0F_035 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1777

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6C0F|1|1|C|1451
6C0F|1|1|A|1452
6C0F|1|1|A|1453
6C0F|1|1|A|1454
6C0F|1|1|U|1455
6C0F|1|1|U|1877
6C0F|1|1|G|1878
6C0F|1|1|A|1879
6C0F|1|1|U|1880
*
6C0F|1|1|A|2352
6C0F|1|1|G|2353

Current chains

Chain 1

Saccharomyces cerevisiae S288c 35S pre-ribosomal RNA miscRNA

Nearby chains

Chain 8

Ribosomal RNA-processing protein 14

Chain P

60S ribosomal protein L17-A