IL_6C4I_022

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

AAU*AU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_022 not in the Motif Atlas

Geometric match to IL_4V83_236

Geometric discrepancy: 0.3

The information below is about IL_4V83_236

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

6C4I|1|A|A|742
6C4I|1|A|A|743
6C4I|1|A|U|744
*
6C4I|1|A|A|753
6C4I|1|A|U|754

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

50S ribosomal protein L34

Chain D

50S ribosomal protein L3