IL_6C4I_037

3D structure

PDB id

6C4I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the peptidyl transferase center during translation termination

Experimental method

ELECTRON MICROSCOPY

Resolution

3.24 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

6C4I|1|A|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C4I_037 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0793

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

6C4I|1|A|U|1018
6C4I|1|A|U|1019
6C4I|1|A|A|1020
6C4I|1|A|A|1021
6C4I|1|A|G|1022
6C4I|1|A|U|1023
6C4I|1|A|G|1024
*
6C4I|1|A|C|1140
6C4I|1|A|U|1141
6C4I|1|A|A|1142
6C4I|1|A|A|1143
6C4I|1|A|A|1144

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L36

Chain G

50S ribosomal protein L6

Chain K

50S ribosomal protein L13