IL_6C5L_011

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

6C5L|1|AA|U|244, 6C5L|1|AA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_011 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.1267

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

6C5L|1|AA|C|242
6C5L|1|AA|A|243
6C5L|1|AA|U|244
6C5L|1|AA|C|245
6C5L|1|AA|A|246
6C5L|1|AA|G|247
*
6C5L|1|AA|C|277
6C5L|1|AA|G|278
6C5L|1|AA|A|279
6C5L|1|AA|C|280
6C5L|1|AA|G|281
6C5L|1|AA|A|282
6C5L|1|AA|C|283
6C5L|1|AA|G|284

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17