IL_6C5L_034

3D structure

PDB id

6C5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Conformation of methylated GGQ in the Peptidyl Transferase Center during translation termination (T. thermophilus)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

GGAGUACG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6C5L_034 not in the Motif Atlas

Homologous match to IL_4LFB_034

Geometric discrepancy: 0.0949

The information below is about IL_4LFB_034

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

6C5L|1|AA|G|887
6C5L|1|AA|G|888
6C5L|1|AA|A|889
6C5L|1|AA|G|890
6C5L|1|AA|U|891
6C5L|1|AA|A|892
6C5L|1|AA|C|893
6C5L|1|AA|G|894
*
6C5L|1|AA|U|905
6C5L|1|AA|G|906
6C5L|1|AA|A|907
6C5L|1|AA|A|908
6C5L|1|AA|A|909
6C5L|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AQ

30S ribosomal protein S17